delnx.tl.NBFitResult¶

class delnx.tl.NBFitResult(beta, overdispersions, mu, size_factors, deviances, design_matrix, design_column_names, feature_names, layer=None, condition_key=None, ql_dispersions=None, df0_prior=0.0, dispersion_trend=None, converged=<factory>)[source]¶

Result container for nb_fit.

beta¶

Fitted coefficients, shape (n_genes, n_coefficients).

Type:: np.ndarray

overdispersions¶

MLE dispersion estimates per gene, shape (n_genes,).

Type:: np.ndarray

mu¶

Fitted mean values, shape (n_samples, n_genes).

Type:: np.ndarray

size_factors¶

Size factors per sample, shape (n_samples,).

Type:: np.ndarray

deviances¶

Deviance per gene, shape (n_genes,).

Type:: np.ndarray

design_matrix¶

Design matrix used, shape (n_samples, n_coefficients).

Type:: np.ndarray

design_column_names¶

Column names for the design matrix (e.g., [“intercept”, “condB”]).

Type:: list[str]

feature_names¶

Feature/gene names.

Type:: pd.Index

layer¶

Layer used for count data.

Type:: str | None

condition_key¶

Condition key used for design.

Type:: str | None

ql_dispersions¶

Quasi-likelihood dispersions (if shrinkage applied).

Type:: np.ndarray | None

df0_prior¶

Prior degrees of freedom from QL shrinkage.

Type:: float

dispersion_trend¶

Fitted dispersion trend.

Type:: np.ndarray | None

converged¶

Convergence status per gene.

Type:: np.ndarray

Attributes table¶

`condition_key`
`df0_prior`
`dispersion_trend`
`layer`
`ql_dispersions`
`beta`
`overdispersions`
`mu`
`size_factors`
`deviances`
`design_matrix`
`design_column_names`
`feature_names`
`converged`

Methods table¶

Attributes¶

NBFitResult.condition_key: str | None = None¶

NBFitResult.df0_prior: float = 0.0¶

NBFitResult.dispersion_trend: ndarray | None = None¶

NBFitResult.layer: str | None = None¶

NBFitResult.ql_dispersions: ndarray | None = None¶

NBFitResult.beta: ndarray¶

NBFitResult.overdispersions: ndarray¶

NBFitResult.mu: ndarray¶

NBFitResult.size_factors: ndarray¶

NBFitResult.deviances: ndarray¶

NBFitResult.design_matrix: ndarray¶

NBFitResult.design_column_names: list[str]¶

NBFitResult.feature_names: Index¶

NBFitResult.converged: ndarray¶

delnx.tl.NBFitResult¶

Attributes table¶

Methods table¶

Attributes¶

Methods¶